Chapter 12 Rose mapping description

12.1 Upload sample data

You need to upload one data files including abundance table.

Such as

Name Test1 Test2 Test3 Test4 Test5 Test6 Test7 Test8 Test9 Test10
Gene1 1.95002 1.077037 3.208613 -1.78024 3.279443 0.629247 3.120752 0.138576 3.937684 -1.32603
Gene2 3.276197 -1.86572 3.014863 -0.40556 1.566751 0.330443 3.965179 -1.41725 0.303218 0.190562
Gene3 3.317709 -0.10454 2.960807 -0.19455 2.742558 -0.81468 2.012905 1.719803 1.787089 0.154111
Gene4 4.134366 -1.90081 1.460098 -0.60399 2.910103 0.959671 2.182429 -1.31582 2.640119 -0.06878
Gene5 3.94789 1.240085 3.936332 0.84429 3.990053 0.694025 3.932734 -0.55117 2.80075 -0.70247

Paying attention, please ,you need to upload the file in the format of the sample data.

12.2 draw

  • If the values should be centered and scaled in either the row direction or the column direction, or none. Corresponding values are “row,” “column” and “none.”

  • The agglomeration method to be used. This should be (an unambiguous abbreviation of) one of “ward.D,” “ward.D2,” “single,” “complete,” “average” (= UPGMA), “mcquitty” (= WPGMA), “median” (= WPGMC) or “centroid” (= UPGMC).

  • Whether to add a border

  • Whether to cluster rows and columns

  • Select the information to be displayed on the table