Chapter 11 3Dmol mapping description

11.1 Upload sample data

Such as this.

For more patterns on input files, you can download them from our Download Sample Files button.

x
HEADER HYDROLASE 15-JUL-20 6ZSL
TITLE CRYSTAL STRUCTURE OF THE SARS-COV-2 HELICASE AT 1.94 ANGSTROM
TITLE 2 RESOLUTION
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: SARS-COV-2 HELICASE NSP13;
COMPND 3 CHAIN: B, A;
COMPND 4 SYNONYM: PP1AB,ORF1AB POLYPROTEIN,SARS-COV-2 HELICASE NSP13;
COMPND 5 EC: 3.4.19.12,3.4.22.-,3.4.22.69,2.7.7.48,3.6.4.12,3.6.4.13,3.1.13.-,
COMPND 6 3.1.-.-,2.1.1.-;

11.2 Draw

11.3 The tool provides two ways to draw 3d drawings.

• Enter the protein id in the PDB database, and the 3D map can be automatically generated.
• According to the format of the sample number, upload the data of the corresponding protein and generate a map.

11.3.1 Datafile way

Input document format (‘pdb,’ ‘sdf,’ ‘xyz,’ ‘pqr,’ or ‘mol2’).

Note that the selected format must be consistent with the format of the uploaded file before drawing.

Whether to keep or strip hydrogens from imported model.

style of cartoon rendering (“trace,” “oval,” “rectangle” (default), “parabola,” “edged”).

11.3.2 PDB id way

Enter the protein id in the PDB database, and the 3D map can be automatically generated.